T.U. NameSynonyms in BnumbersT.U TypeAffected Genes
(Postion & Bnumber)
Fold Lend Rend Orientation Promoters
(Pos_Gene & PlusOne)
Promoter Type Sigma FactorRegProtein
(Pos_Gene & Name)
Center PositionProtein TypeFunctional Class
(Pos_Gene & LevelIII)
Regulator Gene
(Pos_Gene & name & type)
dnaKJb0014,b0015known1 **b0014
2 **b0015
25.200
15.800
12163
14168
14079
15298
F1 12047
1 12121
1 12144
know
know
know
Sigma32
Sigma32
Sigma32
---1 1.3.1
2 1.3.1
-
yi81_1b0016predicted1 **b0016*14.1001544516557F------1 5.1.4-
yi82_1b0017predicted1 **b0017*12.5001586916177R------1 5.1.4-
carABb0032,b0033known1 **b0032
2 **b0033
-23.300
-10.700
29651
30817
30799
34038
F1 29551
1 29619
2 30775
know
know
know
Sigma70
Sigma70
Sigma70
1 IHF
1 ArgR
1 ArgR
29246
29610.5
29632.5
known
known
known
1 3.7.2
2 3.7.2
-
pdhR-aceEF-lpdAb0113,b0114,b0115,
b0116
known1 b0113
2 b0114
3 b0115
4 **b0116
-1.700
-4.200
-4.600
-9.000
122092
123017
125695
127912
122856
125680
127587
129336
F1 122034
2 122970
4 127717
know
know
know
Sigma70
Sigma70
Sigma70
1 PdhR
4 ArcA
4 CRP
4 FIS
122051
0
0
127688.5
known
known
known
known
1 3.5.7
2 3.5.7
3 3.5.7
4 3.5.7
1 pdhR +
lpdAb0116known1 **b0116-9.000127912129336F1 127717knowSigma701 ArcA
1 CRP
1 FIS
0
0
127688.5
known
known
known
1 3.5.7-
yafDEb0209,b0210predicted1 **b0209
2 **b0210
7.200
7.700
231122
231926
231922
232549
F1 231057predictedSigma32---1 0.0.0
2 7.0.0
-
intFb0281predicted1 **b02815.500294920296320R------1 7.0.0-
yahAb0315predicted1 **b03157.700331595332683F------1 0.0.01 yahA +
yahBb0316predicted1 **b03168.800332725333657R------1 7.0.01 yahB -
codBAb0336,b0337known1 **b0336
2 **b0337
-15.200
-12.000
354146
355395
355405
356678
F1 354108knowSigma701 PurR
0known1 1.5.25
2 3.3.17
-
yaiUVb0374,b0375predicted1 **b0374
2 b0375
12.200
1.000
392239
393685
393642
394353
F1 392109predictedSigma70---1 7.0.0
2 0.0.0
2 yaiV +
phoBRb0399,b0400known1 **b0399
2 **b0400
13.400
10.100
416366
417113
417055
418408
F1 416325
2 417030
know
predicted
Sigma70
Sigma70
1 PhoB
416293known1 6.1.1
2 6.1.1
1 phoB +
tsxb0411known1 **b0411-5.600430353431237R1 431469
1 431315
know
know
Sigma70
Sigma70
1 CRP
1 CytR
1 CytR
1 CRP
1 DeoR
431356
431363.5
431367.5
431389
431476.5
known
known
known
known
known
1 1.5.29-
clpPXb0437,b0438known1 **b0437
2 **b0438
7.900
6.200
455901
456650
456524
457924
F1 455853
1 455801
1 455870
predicted
know
know
Sigma70
Sigma32
---1 2.1.4
2 2.1.4
-
lonb0439predicted1 **b04398.900458112460466F1 458024
1 458039
predicted
know
Sigma70
Sigma32
---1 6.1.1-
htpGb0473known1 **b047374.600494344496218F1 494299
1 494308
know
know
Sigma32
Sigma32
---1 1.3.1-
ybbMb0491predicted1 **b04918.700515780516586F------1 1.4.3-
ybbNO-tesAb0492,b0493,b0494predicted3 **b0492
2 b0493
1 b0494
9.100
1.700
1.700
516649
517564
518363
517539
518373
518989
R2 518565
1 519173
predicted
know
Sigma70
Sigma70
1 MetJ
519373predicted3 7.0.0
2 7.0.0
1 3.6.1
-
purKEb0522,b0523known2 **b0522
1 **b0523
-10.800
-6.600
550750
551814
551817
552323
R2 551975
1 552365
predicted
know
Sigma70
Sigma70
1 PurR
552401.5known2 3.7.1
1 3.7.1
-
ylcBb0572predicted1 **b0572-5.500594823596196F---1 PhoB
594752.5predicted1 0.0.0-
yi81_2b0582predicted1 **b0582*19.000607288608400F1 607086predictedSigma70---1 5.1.4-
ybeYZb0659,b0660predicted2 **b0659
1 **b0660
5.600
5.900
691097
691561
691564
692640
R2 691659
1 692707
1 692770
predicted
predicted
predicted
Sigma70
Sigma32
Sigma70
---2 0.0.0
1 1.5.01
-
b0878-ybjZb0878,b0879predicted1 b0878
2 **b0879
1.900
10.200
918431
919570
919573
921516
F------1 7.0.0
2 1.5.02
-
cspDb0880predicted1 **b0880*7.500921589921813R1 921899knowSigma70---1 7.0.01 cspD -
yljAb0881predicted1 **b088110.200922136922456F---1 PapB
921914predicted1 0.0.0-
clpAb0882known1 **b088213.200922487924763F1 922303
1 922315
1 922433
know
know
know
Sigma70---1 2.1.4-
pflB-focAb0903,b0904known2 **b0903*
1 b0904*
-9.000
-1.200
950495
952832
952777
953506
R2 952802
2 952864
2 952964
2 953074
2 953148
1 953715
1 954037
1 953726
know
know
know
know
know
know
know
know
Sigma70
Sigma70
Sigma70
Sigma70
Sigma70
Sigma70
Sigma70
Sigma70
1 ArcA
1 ArcA
1 ArcA
1 NarL
1 CRP
1 FNR
1 ArcA
1 NarL
1 ArcA
1 IHF
1 NarL
1 ArcA
1 ArcA
1 NarL
1 ArcA
1 FNR
953717
953721
953741
953749
953756
953756.5
953785
953796
953807
953827
953891
953925
953953
953971
954043
954095.5
predicted
known
known
known
known
known
predicted
known
known
known
known
predicted
known
known
predicted
known
2 3.5.2
1 1.5.14
-
pflBb0903known1 **b0903*-9.000950495952777R1 952802
1 952864
1 952964
1 953074
1 953148
know
know
know
know
know
Sigma70
Sigma70
Sigma70
Sigma70
Sigma70
---1 3.5.2-
pyrDb0945known1 **b0945-24.10010039911005001F1 1003955knowSigma701 PurR
1003897.5known1 3.7.2-
yccVWb0966,b0967predicted2 **b0966
1 b0967
10.300
-2.000
1027627
1028002
1027995
1029105
R---2 AraC
1027990predicted2 0.0.0
1 0.0.0
-
hyaABCDEFb0972,b0973,b0974,
b0975,b0976,b0977
known1 b0972
2 **b0973
3 b0974
4 b0975
5 b0976
6 b0977
-5.500
-7.000
-3.200
-2.900
-2.400
-6.100
1031362
1032477
1034289
1034993
1035577
1035972
1032480
1034270
1034996
1035580
1035975
1036829
F1 1031337
1 1031337
know
know
Sigma38
Sigma70
1 AppY
1 ArcA
0
0
known
known
1 3.5.1
2 3.5.1
3 3.5.1
4 3.5.1
5 3.5.1
6 3.5.1
-
ycePb1060predicted1 **b10606.30011199241120178R1 1120257predictedSigma70---1 0.0.0-
pyrCb1062known1 **b1062-19.80011207841121830R1 1121868knowSigma701 PurR
1121891.5known1 3.7.2-
flgBCDEFGHIJKb1073,b1074,b1075,
b1076,b1077,b1078,
b1079,b1080,b1081,
b1082
known1 b1073
2 b1074
3 b1075
4 **b1076
5 b1077
6 b1078
7 b1079
8 b1080
9 b1081
10 b1082
-2.000
-1.700
-2.100
-6.600
-2.500
-2.800
-1.200
-1.200
-1.200
-3.000
1130241
1130661
1131077
1131797
1133025
1133952
1134787
1135497
1136594
1137601
1130657
1131065
1131772
1133005
1133780
1134734
1135485
1136594
1137535
1139244
F4 1131609predictedSigma70---1 4.1.5
2 4.1.5
3 4.1.5
4 4.1.5
5 4.1.5
6 4.1.5
7 4.1.5
8 4.1.5
9 4.1.5
10 4.1.5
-
ycfRb1112predicted1 **b11127.60011682961168553F------1 0.0.0-
purB-ycfCb1131,b1132known2 **b1131
1 **b1132
-13.400
-6.500
1189839
1191213
1191209
1191854
R1 1191909knowSigma701 PurR
1191072.5known2 3.7.1
1 3.7.1
-
topAb1274predicted1 **b12745.50013290721331669F1 1329004
1 1328907
1 1328872
1 1328842
1 1328813
know
know
know
know
know
Sigma32
Sigma70
Sigma70
Sigma70
Sigma38
---1 2.2.03-
ycjXFb1321,b1322predicted1 b1321
2 **b1322
3.900
6.800
1382141
1383535
1383538
1384596
F1 1382081predictedSigma32---1 7.0.0
2 0.0.0
-
marRABb1530,b1531,b1532known1 **b1530
2 **b1531*
3 b1532
6.300
7.900
1.000
1617201
1617592
1618013
1617578
1617981
1618231
F1 1617117knowSigma701 MarR
0known1 1.4.3
2 1.4.3
3 1.4.3
1 marR +
2 marA +
b1593b1593predicted1 **b1593*5.70016645481665255R1 1665277predictedSigma70---1 3.2.02-
pykFb1676known1 **b1676-8.30017537221755134F1 1753491knowSigma701 FruR
1753508.5known1 3.5.5-
yeaFb1782predicted1 **b1782*-5.40018637501864496R------1 4.1.2-
htpXb1829known1 **b18298.10019097191910600R1 1910642knowSigma32---1 1.6.1-
cutCb1874known1 **b18746.80019565441956984R------1 1.4.2-
cheWA-motBAb1887,b1888,b1889,
b1890
known4 **b1887
3 **b1888
2 b1889
1 b1890
-5.100
-8.000
-3.500
-1.200
1970860
1971384
1973353
1974276
1971363
1973348
1974279
1975163
R3 1973441predictedSigma70---4 1.1.1
3 1.1.1
2 1.1.1
1 1.1.1
-
yecI-b1903b1902,b1903predicted1 b1902
2 **b1903
-1.100
-6.200
1984948
1985467
1985451
1985805
F------1 1.5.07
2 0.0.0
-
fliDSTb1924,b1925,b1926known1 **b1924
2 b1925
3 b1926
-9.000
-3.200
-1.400
2001895
2003326
2003736
2003301
2003736
2004101
F1 2001859knowSigma28---1 4.1.5
2 4.1.5
3 4.1.5
-
yedUb1967predicted1 **b196731.30020338572034708F------1 0.0.0-
narPb2193predicted1 **b2193*5.80022885202289167F------1 3.5.21 narP +
nuoNMLKJIHGFECBAb2276,b2277,b2278,
b2279,b2280,b2281,
b2282,b2283,b2284,
b2285,b2286,b2287,
b2288
known13 b2276
12 b2277
11 b2278
10 b2279
9 b2280
8 b2281
7 b2282
6 b2283
5 b2284
4 b2285
3 **b2286
2 b2287
1 b2288
-1.100
-1.100
-1.200
-1.200
-1.400
-1.100
-1.600
-4.000
-3.000
-4.800
-5.200
-3.400
-2.400
2388068
2389532
2391225
2393063
2393362
2393928
2394485
2395459
2398238
2399572
2400075
2401971
2402649
2389345
2391061
2393066
2393365
2393916
2394470
2395462
2398191
2399575
2400072
2401877
2402633
2403092
R10 2393484
8 2394631
1 2403182
1 2403354
predicted
predicted
know
know
Sigma70
Sigma70
Sigma70
1 FNR
1 ArcA
1 IHF
1 NarL
2403222.5
2403294
2403295
2403302
known
known
known
known
13 3.5.1
12 3.5.1
11 3.5.1
10 3.5.1
9 3.5.1
8 3.5.1
7 3.5.1
6 3.5.1
5 3.5.1
4 3.5.1
3 3.5.1
2 3.5.1
1 3.5.1
-
ptab2297predicted1 **b2297-7.30024127672414911F------1 3.4.3-
ubiX-purF-cvpAb2311,b2312,b2313known3 b2311
2 b2312
1 **b2313
-1.900
-2.800
-5.700
2426077
2426741
2428295
2426646
2428258
2428783
R2 2428357
1 2428820
1 2428790
predicted
know
know
Sigma70
Sigma70
Sigma70
2 ArsR
1 PurR
2428340.5
2428848.5
predicted
known
3 7.0.0
2 3.7.1
1 5.1.1
-
yi81_3b2394predicted1 **b2394*16.40025123452513463F------1 7.0.0-
purCb2476known1 **b2476-7.10025949252595638R1 2595801knowSigma701 PurR
2595800.5known1 3.7.1-
uraA-uppb2497,b2498known2 **b2497
1 **b2498
-8.500
-11.800
2616891
2618266
2618180
2618892
R1 2618929knowSigma70---2 1.5.23
1 3.3.17
-
purMNb2499,b2500known1 b2499
2 **b2500
-2.500
-13.200
2619217
2620254
2620254
2620892
F1 2619173knowSigma701 PurR
2619145.5known1 3.7.1
2 3.7.1
-
guaABb2507,b2508known2 **b2507
1 **b2508
-10.400
-6.800
2628978
2630624
2630555
2632090
R1 2632127knowSigma701 PurR
2632372.5known2 3.7.1
1 3.7.1
-
glyAb2551known1 **b2551-15.90026822742683527R1 2683594knowSigma701 PurR
1 MetR
1 MetR
2683654.5
2683715.5
2683737.5
known
known
known
1 3.1.09-
rseCBA-rpoEb2570,b2571,b2572,
b2573
known4 b2570
3 b2571
2 **b2572
1 **b2573
1.800
3.700
10.500
6.500
2705342
2705818
2706774
2707457
2705821
2706774
2707424
2708032
R1 2708206
1 2708107
know
know
-
Sigma24
---4 6.1.1
3 6.1.1
2 6.1.1
1 6.1.1
-
rseCBAb2570,b2571,b2572known3 b2570
2 b2571
1 **b2572
1.800
3.700
10.500
2705342
2705818
2706774
2705821
2706774
2707424
R------3 6.1.1
2 6.1.1
1 6.1.1
-
clpBb2592known1 **b2592102.20027296202732193R1 2732225knowSigma32---1 2.1.4-
b2611-ypjE-yfjDb2611,b2612,b2613predicted1 b2611
2 b2612
3 **b2613
-1.200
1.400
6.200
2745907
2746818
2747398
2746773
2747408
2748081
F------1 0.0.0
2 0.0.0
3 0.0.0
2 ypjE +
grpEb2614known1 **b261415.00027481362748729R1 2748768knowSigma32---1 5.1.2-
enob2779predicted1 **b2779-5.00029046652905963R------1 3.5.5-
sdaCBb2796,b2797known1 **b2796
2 b2797*
6.200
2.700
2926251
2927598
2927540
2928965
F1 2926043predictedSigma70---1 1.5.36
2 3.4.2
-
fbab2925predicted1 **b2925-9.40030681853069264R------1 3.5.5-
endAb2945known1 **b2945-5.50030883663089073F1 3088346
1 3088294
know
know
Sigma70
Sigma70
---1 2.1.1-
b3021-ygiUb3021,b3022predicted2 b3021
1 **b3022
1.800
8.700
3165867
3166264
3166262
3166560
R------2 0.0.0
1 0.0.0
2 b3021 -
rpsU-dnaG-rpoDb3065,b3066,b3067known1 b3065
2 b3066
3 **b3067
-1.000
4.100
7.900
3208422
3208748
3210688
3208637
3210493
3212529
F1 3208287
1 3208353
1 3208376
3 3210114
3 3210278
3 3210329
know
know
know
know
know
know
Sigma70
Sigma70
Sigma70
Sigma70
Sigma70
Sigma32
1 LexA
3208379.5known1 4.2.2
2 2.2.03
3 6.1.1
-
rpsUb3065known1 b3065-1.00032084223208637F1 3208287
1 3208353
1 3208376
know
know
know
Sigma70
Sigma70
Sigma70
1 LexA
3208379.5known1 4.2.2-
rpoDb3067known1 **b30677.90032106883212529F1 3210114
1 3210278
1 3210329
know
know
know
Sigma70
Sigma70
Sigma32
---1 6.1.1-
tdcGFEDCBAb3112,b3113,b3114,
b3115,b3116,b3117,
b3118
known7 b3112*
6 b3113*
5 **b3114
4 b3115
3 b3116
2 b3117
1 b3118
1.000
1.000
-8.600
1.000
1.000
-1.200
1.000
3256875
3257363
3257819
3260093
3261327
3262680
3263768
3257297
3257815
3260059
3261313
3262658
3263669
3264706
R4 3261392
3 3262787
2 3263701
1 3264737
1 3264814
predicted
predicted
predicted
know
predicted
Sigma70
Sigma70
Sigma70
-
Sigma70
1 CRP
1 IHF
1 FNR
1 LysR
1 TdcA
1 TdcR
3264777
3264840
3264877.5
3264912
3264914
3264932.5
known
known
known
known
known
known
7 3.4.2
6 0.0.0
5 3.5.2
4 3.4.2
3 1.5.36
2 3.4.2
1 3.4.2
1 tdcA -
hflB-ftsJb3178,b3179known2 b3178
1 **b3179
4.400
20.200
3322642
3324676
3324576
3325305
R1 3325401
1 3325372
know
know
Sigma70
Sigma32
---2 2.1.4
1 1.7.1
-
yrdB-aroE-yrdCDb3280,b3281,b3282,
b3283
predicted4 **b3280
3 b3281
2 b3282
1 b3283
5.300
3.400
1.100
2.200
3427403
3427657
3428480
3429057
3427660
3428475
3429052
3429566
R------4 0.0.0
3 3.1.05
2 0.0.0
1 7.0.0
-
zntR-yhdNb3292,b3293predicted2 b3292
1 **b3293
4.600
13.300
3436342
3436778
3436767
3437146
R2 3436854predictedSigma70---2 7.0.0
1 0.0.0
2 yhdM -
yheLMNOb3343,b3344,b3345,
b3346
predicted4 **b3343
3 b3344
2 b3345
1 b3346
12.000
1.000
-1.400
-1.700
3472315
3472610
3472969
3473355
3472602
3472969
3473355
3474089
R2 3473368
1 3474193
predicted
predicted
Sigma70
Sigma70
4 MalT
3472581predicted4 0.0.0
3 0.0.0
2 0.0.0
1 0.0.0
1 yheO -
yrfFGHIb3398,b3399,b3400,
b3401
predicted1 b3398
2 **b3399
3 **b3400
4 **b3401
1.000
17.900
42.900
28.800
3524107
3526262
3526986
3527406
3526242
3526975
3527387
3528290
F1 3523982
4 3527289
predicted
predicted
Sigma70
Sigma70
---1 7.0.0
2 0.0.0
3 1.6.1
4 1.3.1
-
yhgEb3402predicted1 **b34028.00035283533530077R------1 7.0.0-
yhgHb3413predicted1 **b34136.10035424703543201F------1 7.0.0-
yhiQ-prlCb3497,b3498predicted2 b3497
1 **b3498
1.200
19.700
3640010
3640770
3640762
3642812
R1 3642883predictedSigma32---2 0.0.0
1 2.1.4
-
yhiEb3512predicted1 **b3512-9.40036559963656523F------1 0.0.0-
mutMb3635predicted1 **b36355.40038079703808779R------1 2.2.03-
uhpCBAb3667,b3668,b3669known3 b3667
2 b3668
1 **b3669
4.600
3.000
7.400
3844932
3846261
3847763
3846254
3847766
3848353
R------3 1.5.21
2 1.5.21
1 1.5.21
1 uhpA -
yidEb3685predicted1 **b36857.30038622393863924R------1 7.0.0-
ibpBAb3686,b3687known2 **b3686
1 **b3687
393.400
288.100
3864096
3864636
3864530
3865049
R1 3865145
1 3865159
know
predicted
Sigma32
Sigma70
---2 1.6.1
1 1.6.1
-
corAb3816known1 **b381615.60039990383999988F1 3998806knowSigma70---1 1.5.23-
hslUVb3931,b3932known2 **b3931
1 **b3932
16.100
31.500
4117996
4119337
4119327
4119867
R1 4119934
1 4119939
know
predicted
Sigma32
Sigma70
---2 1.6.1
1 2.1.4
-
yjdEb4115predicted1 **b4115-8.00043332724334609R------1 7.0.0-
adiYAb4116,b4117known2 b4116*
1 **b4117
1.000
-6.900
4334746
4335832
4335507
4338102
R---2 TyrR
1 PutA
4335664
4338243
predicted
predicted
2 7.0.0
1 3.4.2
2 adiY -
cadABb4131,b4132known2 **b4131
1 **b4132
41.600
7.300
4354048
4356275
4356195
4357609
R1 4357684knowSigma701 CadC
0known2 3.4.2
1 1.5.42
-
b4140b4140predicted1 **b414022.50043663414366718F------1 0.0.0-
yjeHb4141predicted1 **b41419.80043667344367990R------1 7.0.0-
mopBAb4142,b4143predicted1 **b4142
2 **b4143
34.300
40.000
4368266
4368603
4368559
4370249
F1 4368194
2 4368458
know
predicted
Sigma32
Sigma70
1 OmpR
4368145predicted1 1.7.1
2 1.7.1
-
amiB-mutL-miaA-hfq-hflXKCb4169,b4170,b4171,
b4172,b4173,b4174,
b4175
known1 b4169
2 b4170
3 **b4171
4 **b4172
5 **b4173
6 b4174
7 b4175
1.400
1.000
23.400
9.300
5.900
2.000
2.100
4393643
4394990
4396830
4397866
4398250
4399616
4400878
4394980
4396837
4397780
4398174
4399530
4400875
4401882
F------1 4.1.2
2 2.2.03
3 2.2.01
4 5.1.2
5 2.1.4
6 2.1.4
7 2.1.4
-
cycAb4208predicted1 **b4208*9.90044274424428854F------1 1.5.42-
ytfEb4209predicted1 **b42098.80044288994429561R------1 0.0.0-
treCBb4239,b4240known2 **b4239
1 b4240
5.200
-1.300
4460628
4462333
4462283
4463754
R1 4463784knowSigma701 CRP
1 CRP
4463773
4463850
known
known
2 3.4.3
1 1.5.37
-
pyrIBb4244,b4245known2 **b4244
1 **b4245
-73.600
-150.100
4468560
4469034
4469021
4469969
R1 4470320
1 4470127
know
know
Sigma70
Sigma70
---2 3.7.2
1 3.7.2
-
pyrLb4246predicted1 **b4246-26.70044699734470107R------1 3.7.2-
creABCDb4397,b4398,b4399,
b4400
known1 b4397
2 **b4398
3 b4399
4 b4400
4.300
5.900
4.000
1.300
4633090
4633576
4634265
4635747
4633563
4634265
4635689
4637099
F1 4633046
4 4635704
know
predicted
Sigma70
Sigma70
---1 0.0.0
2 6.1.1
3 6.1.1
4 5.1.1
2 creB +

*Paralog


**Heat-Shock significative (NAR pp 3821-3835, Volume 27, Issue 19,1999)