Found Dyadas.
 
Class Dyad Protein Obv_frq No.Genes TotalGenes NGenesReg exp_frq sig ovlaps
Metabolism of small molecules-Energy metabolism, carbon-Aerobic respiration agcn{2}tcg|cgan{2}gct CRP 4 2 3 0 0.00012 0.3 0
REPRESSED actn{13}ggc|gccn{13}agt ArcA 11 11 35 0 0.00015 0.4 0

DNA Patterns corresponding to Dyadas:
 
Class dyad Protein bnum dirGen name dirSite start end site score BeRegulatedby
Metabolism of small molecules-Energy metabolism, carbon-Aerobic respiration agcn{2}tcg|cgan{2}gct CRP b0972 + 1787206_hyaA_upstream_-200_0_ecoli_D_1031162_1031362 D -117 -110 gatgAGCTTTCGtttt 0.30 AppY,ArcA
Metabolism of small molecules-Energy metabolism, carbon-Aerobic respiration agcn{2}tcg|cgan{2}gct CRP b0977 + 1787211_hyaF_upstream_-200_0_ecoli_D_1035772_1035972 D -153 -146 gcgaAGCCATCGgcga 0.30 .
Metabolism of small molecules-Energy metabolism, carbon-Aerobic respiration agcn{2}tcg|cgan{2}gct CRP b0977 + 1787211_hyaF_upstream_-200_0_ecoli_D_1035772_1035972 R -178 -171 ggtcAGCAATCGccac 0.30 .
Metabolism of small molecules-Energy metabolism, carbon-Aerobic respiration agcn{2}tcg|cgan{2}gct CRP b0977 + 1787211_hyaF_upstream_-200_0_ecoli_D_1035772_1035972 R -144 -137 ccaaAGCGATCGccga 0.30 .
REPRESSED actn{13}ggc|gccn{13}agt ArcA b0523 - 1786734_purE_upstream_-200_0_ecoli_R_552323_552523 R -45 -27 cacaACTCTCGGCTTTAGAGGGCacag 0.40 PurR
REPRESSED actn{13}ggc|gccn{13}agt ArcA b0572 + 1786785_ylcB_upstream_-200_0_ecoli_D_594623_594823 R -140 -122 cgctACTCTAGAATTGCCCGGGCaaca 0.40 .
REPRESSED actn{13}ggc|gccn{13}agt ArcA b0977 + 1787211_hyaF_upstream_-200_0_ecoli_D_1035772_1035972 D -196 -178 cccgACTATACATGGCAGGTGGCgatt 0.40 .
REPRESSED actn{13}ggc|gccn{13}agt ArcA b1062 - 1787301_pyrC_upstream_-200_0_ecoli_R_1121830_1122030 D -114 -96 atttACTGATTAATCACGAGGGCgcat 0.40 PurR
REPRESSED actn{13}ggc|gccn{13}agt ArcA b1076 + 1787316_flgE_upstream_-200_0_ecoli_D_1131597_1131797 R -24 -6 actgACTCCTGAAATGTGAAGGCttaa 0.40 .
REPRESSED actn{13}ggc|gccn{13}agt ArcA b1132 - 1787377_ycfC_upstream_-200_0_ecoli_R_1191854_1192054 R -128 -110 gcagACTGGCCCGGCGTCACGGCggca 0.40 PurR
REPRESSED actn{13}ggc|gccn{13}agt ArcA b2945 + 1789314_endA_upstream_-200_0_ecoli_D_3088166_3088366 R -171 -153 acgaACTACGCGATTATGGCGGCgtac 0.40 .
REPRESSED actn{13}ggc|gccn{13}agt ArcA b4115 - 2367353_yjdE_upstream_-200_0_ecoli_R_4334609_4334809 R -182 -164 gctgACTAACATAATGCAGCGGCgtca 0.40 .
REPRESSED actn{13}ggc|gccn{13}agt ArcA b4117 - 1790558_adiA_upstream_-200_0_ecoli_R_4338102_4338302 R -161 -143 tttcACTGCTTATTATCGACGGCtaaa 0.40 .
REPRESSED actn{13}ggc|gccn{13}agt ArcA b4245 - 2367364_pyrB_upstream_-200_0_ecoli_R_4469969_4470169 R -187 -169 ttatACTCATCGTCAGAAGCGGCgcaa 0.40 .
REPRESSED actn{13}ggc|gccn{13}agt ArcA b4246 - 1790694_pyrL_upstream_-200_0_ecoli_R_4470107_4470307 R -49 -31 ttatACTCATCGTCAGAAGCGGCgcaa 0.40 .