Found Dyadas.
 
Class Dyad Protein Obv_frq No.Genes TotalGenes NGenesReg exp_frq sig ovlaps
Extrachromosomal-Laterally acquirred elements-Transposon-related functions cccn{2}aag|cttn{2}ggg FNR 5 2 3 0 0.00020 0.8 0
Global functions-Global regulatory functions-Global regulatory functions gggn{5}tta|taan{5}ccc CytR 6 4 6 0 0.00022 0.2 0
Cell processes-Protection responses gaan{8}tgc|gcan{8}ttc CRP 5 3 3 0 0.00025 0.3 0
Macromolecule metabolism-Macromolecule synthesis, modification acgn{12}act|agtn{12}cgt ArcA 4 3 3 0 0.00014 0.0 0
Extrachromosomal-Laterally acquirred elements cccn{2}aag|cttn{2}ggg FNR 5 2 4 0 0.00020 0.2 0
Global functions-Global regulatory functions gggn{5}tta|taan{5}ccc CytR 6 4 6 0 0.00022 0.2 0
Extrachromosomal cccn{2}aag|cttn{2}ggg FNR 5 2 4 0 0.00020 0.2 0
Global functions gggn{5}tta|taan{5}ccc CytR 6 4 6 0 0.00022 0.2 0

DNA Patterns corresponding to Dyadas:
 
Class dyad Protein bnum dirGen name dirSite start end site score BeRegulatedby
Extrachromosomal-Laterally acquirred elements-Transposon-related functions cccn{2}aag|cttn{2}ggg FNR b0016 + 1786198_yi81_1_upstream_-200_0_ecoli_D_15245_15445 D -142 -135 cctcCCCAAAAGcctg 0.80 .
Extrachromosomal-Laterally acquirred elements-Transposon-related functions cccn{2}aag|cttn{2}ggg FNR b0016 + 1786198_yi81_1_upstream_-200_0_ecoli_D_15245_15445 D -57 -50 cactCCCATAAGcgct 0.80 .
Extrachromosomal-Laterally acquirred elements-Transposon-related functions cccn{2}aag|cttn{2}ggg FNR b0016 + 1786198_yi81_1_upstream_-200_0_ecoli_D_15245_15445 R -43 -36 acaaCCCTTAAGttag 0.80 .
Extrachromosomal-Laterally acquirred elements-Transposon-related functions cccn{2}aag|cttn{2}ggg FNR b0582 + 1786796_yi81_2_upstream_-200_0_ecoli_D_607088_607288 D -57 -50 taatCCCATAAGcgct 0.80 .
Extrachromosomal-Laterally acquirred elements-Transposon-related functions cccn{2}aag|cttn{2}ggg FNR b0582 + 1786796_yi81_2_upstream_-200_0_ecoli_D_607088_607288 R -43 -36 acaaCCCTTAAGttag 0.80 .
Global functions-Global regulatory functions-Global regulatory functions gggn{5}tta|taan{5}ccc CytR b0399 + 1786599_phoB_upstream_-200_0_ecoli_D_416166_416366 D -165 -155 gcatGGGCGCGATTAtacc 0.20 PhoB
Global functions-Global regulatory functions-Global regulatory functions gggn{5}tta|taan{5}ccc CytR b0399 + 1786599_phoB_upstream_-200_0_ecoli_D_416166_416366 R -190 -180 gccaGGGAACCGTTAtgcg 0.20 PhoB
Global functions-Global regulatory functions-Global regulatory functions gggn{5}tta|taan{5}ccc CytR b0439 + 1786643_lon_upstream_-200_0_ecoli_D_457912_458112 D -153 -143 aaagGGGGGATTTTAtctc 0.20 .
Global functions-Global regulatory functions-Global regulatory functions gggn{5}tta|taan{5}ccc CytR b0439 + 1786643_lon_upstream_-200_0_ecoli_D_457912_458112 R -186 -176 gtatGGGAATGGTTAatta 0.20 .
Global functions-Global regulatory functions-Global regulatory functions gggn{5}tta|taan{5}ccc CytR b2573 - 1788926_rpoE_upstream_-200_0_ecoli_R_2708032_2708232 D -17 -7 tttgGGGAGACTTTAcctc 0.20 .
Global functions-Global regulatory functions-Global regulatory functions gggn{5}tta|taan{5}ccc CytR b3067 + 1789448_rpoD_upstream_-200_0_ecoli_D_3210488_3210688 R -122 -112 acgaGGGCGTACTTAtata 0.20 .
Cell processes-Protection responses gaan{8}tgc|gcan{8}ttc CRP b0491 + 1786699_ybbM_upstream_-200_0_ecoli_D_515580_515780 D -170 -157 tgccGAAGGTTTTATTGCtgga 0.30 .
Cell processes-Protection responses gaan{8}tgc|gcan{8}ttc CRP b0491 + 1786699_ybbM_upstream_-200_0_ecoli_D_515580_515780 D -151 -138 ggatGAAATAACCAGTGCgctg 0.30 .
Cell processes-Protection responses gaan{8}tgc|gcan{8}ttc CRP b0491 + 1786699_ybbM_upstream_-200_0_ecoli_D_515580_515780 D -40 -27 agacGAAATTAATCATGCggat 0.30 .
Cell processes-Protection responses gaan{8}tgc|gcan{8}ttc CRP b1530 + 1787810_marR_upstream_-200_0_ecoli_D_1617001_1617201 R -140 -127 gaatGAATTGACCGATGCcacg 0.30 MarR
Cell processes-Protection responses gaan{8}tgc|gcan{8}ttc CRP b1874 - 1788182_cutC_upstream_-200_0_ecoli_R_1956984_1957184 R -145 -132 gggcGAATTATCGGATGCacag 0.30 .
Macromolecule metabolism-Macromolecule synthesis, modification acgn{12}act|agtn{12}cgt ArcA b1274 + 1787529_topA_upstream_-200_0_ecoli_D_1328872_1329072 R -142 -125 gttcACGAAAATTCAGGTGACTgagt 0.00 .
Macromolecule metabolism-Macromolecule synthesis, modification acgn{12}act|agtn{12}cgt ArcA b3635 - 1790066_mutM_upstream_-200_0_ecoli_R_3808779_3808979 D -196 -179 cactACGAAGAACAAACGTACTaagc 0.00 .
Macromolecule metabolism-Macromolecule synthesis, modification acgn{12}act|agtn{12}cgt ArcA b3635 - 1790066_mutM_upstream_-200_0_ecoli_R_3808779_3808979 R -143 -126 gatcACGTGCTGGCGAACAACTggat 0.00 .
Macromolecule metabolism-Macromolecule synthesis, modification acgn{12}act|agtn{12}cgt ArcA b4171 + 1790613_miaA_upstream_-200_0_ecoli_D_4396630_4396830 D -86 -69 tggaACGGTTATGTCCGCAACTtgtg 0.00 .
Extrachromosomal-Laterally acquirred elements cccn{2}aag|cttn{2}ggg FNR b0016 + 1786198_yi81_1_upstream_-200_0_ecoli_D_15245_15445 D -142 -135 cctcCCCAAAAGcctg 0.20 .
Extrachromosomal-Laterally acquirred elements cccn{2}aag|cttn{2}ggg FNR b0016 + 1786198_yi81_1_upstream_-200_0_ecoli_D_15245_15445 D -57 -50 cactCCCATAAGcgct 0.20 .
Extrachromosomal-Laterally acquirred elements cccn{2}aag|cttn{2}ggg FNR b0016 + 1786198_yi81_1_upstream_-200_0_ecoli_D_15245_15445 R -43 -36 acaaCCCTTAAGttag 0.20 .
Extrachromosomal-Laterally acquirred elements cccn{2}aag|cttn{2}ggg FNR b0582 + 1786796_yi81_2_upstream_-200_0_ecoli_D_607088_607288 D -57 -50 taatCCCATAAGcgct 0.20 .
Extrachromosomal-Laterally acquirred elements cccn{2}aag|cttn{2}ggg FNR b0582 + 1786796_yi81_2_upstream_-200_0_ecoli_D_607088_607288 R -43 -36 acaaCCCTTAAGttag 0.20 .
Global functions-Global regulatory functions gggn{5}tta|taan{5}ccc CytR b0399 + 1786599_phoB_upstream_-200_0_ecoli_D_416166_416366 D -165 -155 gcatGGGCGCGATTAtacc 0.20 PhoB
Global functions-Global regulatory functions gggn{5}tta|taan{5}ccc CytR b0399 + 1786599_phoB_upstream_-200_0_ecoli_D_416166_416366 R -190 -180 gccaGGGAACCGTTAtgcg 0.20 PhoB
Global functions-Global regulatory functions gggn{5}tta|taan{5}ccc CytR b0439 + 1786643_lon_upstream_-200_0_ecoli_D_457912_458112 D -153 -143 aaagGGGGGATTTTAtctc 0.20 .
Global functions-Global regulatory functions gggn{5}tta|taan{5}ccc CytR b0439 + 1786643_lon_upstream_-200_0_ecoli_D_457912_458112 R -186 -176 gtatGGGAATGGTTAatta 0.20 .
Global functions-Global regulatory functions gggn{5}tta|taan{5}ccc CytR b2573 - 1788926_rpoE_upstream_-200_0_ecoli_R_2708032_2708232 D -17 -7 tttgGGGAGACTTTAcctc 0.20 .
Global functions-Global regulatory functions gggn{5}tta|taan{5}ccc CytR b3067 + 1789448_rpoD_upstream_-200_0_ecoli_D_3210488_3210688 R -122 -112 acgaGGGCGTACTTAtata 0.20 .
Extrachromosomal cccn{2}aag|cttn{2}ggg FNR b0016 + 1786198_yi81_1_upstream_-200_0_ecoli_D_15245_15445 D -142 -135 cctcCCCAAAAGcctg 0.20 .
Extrachromosomal cccn{2}aag|cttn{2}ggg FNR b0016 + 1786198_yi81_1_upstream_-200_0_ecoli_D_15245_15445 D -57 -50 cactCCCATAAGcgct 0.20 .
Extrachromosomal cccn{2}aag|cttn{2}ggg FNR b0016 + 1786198_yi81_1_upstream_-200_0_ecoli_D_15245_15445 R -43 -36 acaaCCCTTAAGttag 0.20 .
Extrachromosomal cccn{2}aag|cttn{2}ggg FNR b0582 + 1786796_yi81_2_upstream_-200_0_ecoli_D_607088_607288 D -57 -50 taatCCCATAAGcgct 0.20 .
Extrachromosomal cccn{2}aag|cttn{2}ggg FNR b0582 + 1786796_yi81_2_upstream_-200_0_ecoli_D_607088_607288 R -43 -36 acaaCCCTTAAGttag 0.20 .
Global functions gggn{5}tta|taan{5}ccc CytR b0399 + 1786599_phoB_upstream_-200_0_ecoli_D_416166_416366 D -165 -155 gcatGGGCGCGATTAtacc 0.20 PhoB
Global functions gggn{5}tta|taan{5}ccc CytR b0399 + 1786599_phoB_upstream_-200_0_ecoli_D_416166_416366 R -190 -180 gccaGGGAACCGTTAtgcg 0.20 PhoB
Global functions gggn{5}tta|taan{5}ccc CytR b0439 + 1786643_lon_upstream_-200_0_ecoli_D_457912_458112 D -153 -143 aaagGGGGGATTTTAtctc 0.20 .
Global functions gggn{5}tta|taan{5}ccc CytR b0439 + 1786643_lon_upstream_-200_0_ecoli_D_457912_458112 R -186 -176 gtatGGGAATGGTTAatta 0.20 .
Global functions gggn{5}tta|taan{5}ccc CytR b2573 - 1788926_rpoE_upstream_-200_0_ecoli_R_2708032_2708232 D -17 -7 tttgGGGAGACTTTAcctc 0.20 .
Global functions gggn{5}tta|taan{5}ccc CytR b3067 + 1789448_rpoD_upstream_-200_0_ecoli_D_3210488_3210688 R -122 -112 acgaGGGCGTACTTAtata 0.20 .