Found Dyadas.
 
Class Dyad Protein Obv_frq No.Genes TotalGenes NGenesReg exp_frq sig ovlaps
Metabolism of small molecules-Degradation of small molecules-Carbon compounds cgcn{2}gac|gtcn{2}gcg ArcA 4 2 2 0 0.00016 0.5 0
Metabolism of small molecules-Degradation of small molecules-Carbon compounds aacn{13}tcg|cgan{13}gtt ArcA 4 2 2 0 0.00016 0.4 0
Metabolism of small molecules-Energy metabolism, carbon-Aerobic respiration agcn{2}tcg|cgan{2}gct CRP 4 2 3 0 0.00012 0.3 0
Extrachromosomal-Laterally acquirred elements-Transposon-related functions cccn{2}aag|cttn{2}ggg FNR 5 2 3 0 0.00020 0.8 0
Global functions-Global regulatory functions-Global regulatory functions gggn{5}tta|taan{5}ccc CytR 6 4 6 0 0.00022 0.2 0
Cell processes-Protection responses gaan{8}tgc|gcan{8}ttc CRP 5 3 3 0 0.00025 0.3 0
Macromolecule metabolism-Macromolecule synthesis, modification acgn{12}act|agtn{12}cgt ArcA 4 3 3 0 0.00014 0.0 0
Global functions-Global regulatory functions gggn{5}tta|taan{5}ccc CytR 6 4 6 0 0.00022 0.2 0
Global functions gggn{5}tta|taan{5}ccc CytR 6 4 6 0 0.00022 0.2 0

DNA Patterns corresponding to Dyadas:
 
Class dyad Protein bnum dirGen name dirSite start end site score BeRegulatedby
Metabolism of small molecules-Degradation of small molecules-Carbon compounds cgcn{2}gac|gtcn{2}gcg ArcA b2297 + 1788635_pta_upstream_-200_0_ecoli_D_2412567_2412767 D -103 -96 atcgCGCAAGACgcga 0.50 .
Metabolism of small molecules-Degradation of small molecules-Carbon compounds cgcn{2}gac|gtcn{2}gcg ArcA b2297 + 1788635_pta_upstream_-200_0_ecoli_D_2412567_2412767 D -89 -82 gagcCGCCTGACtgcc 0.50 .
Metabolism of small molecules-Degradation of small molecules-Carbon compounds cgcn{2}gac|gtcn{2}gcg ArcA b2297 + 1788635_pta_upstream_-200_0_ecoli_D_2412567_2412767 R -145 -138 ccacCGCAGGACgggt 0.50 .
Metabolism of small molecules-Degradation of small molecules-Carbon compounds cgcn{2}gac|gtcn{2}gcg ArcA b4239 - 1790687_treC_upstream_-200_0_ecoli_R_4462283_4462483 D -66 -59 ggcaCGCTGGACattg 0.50 .
Metabolism of small molecules-Degradation of small molecules-Carbon compounds aacn{13}tcg|cgan{13}gtt ArcA b2297 + 1788635_pta_upstream_-200_0_ecoli_D_2412567_2412767 D -197 -179 cgcAACCTGGCTGCACGTTTCGgcaa 0.40 .
Metabolism of small molecules-Degradation of small molecules-Carbon compounds aacn{13}tcg|cgan{13}gtt ArcA b2297 + 1788635_pta_upstream_-200_0_ecoli_D_2412567_2412767 D -122 -104 aaccAACGAAGAACTGGTTATCGcgca 0.40 .
Metabolism of small molecules-Degradation of small molecules-Carbon compounds aacn{13}tcg|cgan{13}gtt ArcA b4239 - 1790687_treC_upstream_-200_0_ecoli_R_4462283_4462483 R -165 -147 cgcaAACACCTGCCAGTAGCTCGgttg 0.40 .
Metabolism of small molecules-Degradation of small molecules-Carbon compounds aacn{13}tcg|cgan{13}gtt ArcA b4239 - 1790687_treC_upstream_-200_0_ecoli_R_4462283_4462483 R -114 -96 gataAACGAGGTGAGTACAATCGggat 0.40 .
Metabolism of small molecules-Energy metabolism, carbon-Aerobic respiration agcn{2}tcg|cgan{2}gct CRP b0972 + 1787206_hyaA_upstream_-200_0_ecoli_D_1031162_1031362 D -117 -110 gatgAGCTTTCGtttt 0.30 AppY,ArcA
Metabolism of small molecules-Energy metabolism, carbon-Aerobic respiration agcn{2}tcg|cgan{2}gct CRP b0977 + 1787211_hyaF_upstream_-200_0_ecoli_D_1035772_1035972 D -153 -146 gcgaAGCCATCGgcga 0.30 .
Metabolism of small molecules-Energy metabolism, carbon-Aerobic respiration agcn{2}tcg|cgan{2}gct CRP b0977 + 1787211_hyaF_upstream_-200_0_ecoli_D_1035772_1035972 R -178 -171 ggtcAGCAATCGccac 0.30 .
Metabolism of small molecules-Energy metabolism, carbon-Aerobic respiration agcn{2}tcg|cgan{2}gct CRP b0977 + 1787211_hyaF_upstream_-200_0_ecoli_D_1035772_1035972 R -144 -137 ccaaAGCGATCGccga 0.30 .
Extrachromosomal-Laterally acquirred elements-Transposon-related functions cccn{2}aag|cttn{2}ggg FNR b0016 + 1786198_yi81_1_upstream_-200_0_ecoli_D_15245_15445 D -142 -135 cctcCCCAAAAGcctg 0.80 .
Extrachromosomal-Laterally acquirred elements-Transposon-related functions cccn{2}aag|cttn{2}ggg FNR b0016 + 1786198_yi81_1_upstream_-200_0_ecoli_D_15245_15445 D -57 -50 cactCCCATAAGcgct 0.80 .
Extrachromosomal-Laterally acquirred elements-Transposon-related functions cccn{2}aag|cttn{2}ggg FNR b0016 + 1786198_yi81_1_upstream_-200_0_ecoli_D_15245_15445 R -43 -36 acaaCCCTTAAGttag 0.80 .
Extrachromosomal-Laterally acquirred elements-Transposon-related functions cccn{2}aag|cttn{2}ggg FNR b0582 + 1786796_yi81_2_upstream_-200_0_ecoli_D_607088_607288 D -57 -50 taatCCCATAAGcgct 0.80 .
Extrachromosomal-Laterally acquirred elements-Transposon-related functions cccn{2}aag|cttn{2}ggg FNR b0582 + 1786796_yi81_2_upstream_-200_0_ecoli_D_607088_607288 R -43 -36 acaaCCCTTAAGttag 0.80 .
Global functions-Global regulatory functions-Global regulatory functions gggn{5}tta|taan{5}ccc CytR b0399 + 1786599_phoB_upstream_-200_0_ecoli_D_416166_416366 D -165 -155 gcatGGGCGCGATTAtacc 0.20 PhoB
Global functions-Global regulatory functions-Global regulatory functions gggn{5}tta|taan{5}ccc CytR b0399 + 1786599_phoB_upstream_-200_0_ecoli_D_416166_416366 R -190 -180 gccaGGGAACCGTTAtgcg 0.20 PhoB
Global functions-Global regulatory functions-Global regulatory functions gggn{5}tta|taan{5}ccc CytR b0439 + 1786643_lon_upstream_-200_0_ecoli_D_457912_458112 D -153 -143 aaagGGGGGATTTTAtctc 0.20 .
Global functions-Global regulatory functions-Global regulatory functions gggn{5}tta|taan{5}ccc CytR b0439 + 1786643_lon_upstream_-200_0_ecoli_D_457912_458112 R -186 -176 gtatGGGAATGGTTAatta 0.20 .
Global functions-Global regulatory functions-Global regulatory functions gggn{5}tta|taan{5}ccc CytR b2573 - 1788926_rpoE_upstream_-200_0_ecoli_R_2708032_2708232 D -17 -7 tttgGGGAGACTTTAcctc 0.20 .
Global functions-Global regulatory functions-Global regulatory functions gggn{5}tta|taan{5}ccc CytR b3067 + 1789448_rpoD_upstream_-200_0_ecoli_D_3210488_3210688 R -122 -112 acgaGGGCGTACTTAtata 0.20 .
Cell processes-Protection responses gaan{8}tgc|gcan{8}ttc CRP b0491 + 1786699_ybbM_upstream_-200_0_ecoli_D_515580_515780 D -170 -157 tgccGAAGGTTTTATTGCtgga 0.30 .
Cell processes-Protection responses gaan{8}tgc|gcan{8}ttc CRP b0491 + 1786699_ybbM_upstream_-200_0_ecoli_D_515580_515780 D -151 -138 ggatGAAATAACCAGTGCgctg 0.30 .
Cell processes-Protection responses gaan{8}tgc|gcan{8}ttc CRP b0491 + 1786699_ybbM_upstream_-200_0_ecoli_D_515580_515780 D -40 -27 agacGAAATTAATCATGCggat 0.30 .
Cell processes-Protection responses gaan{8}tgc|gcan{8}ttc CRP b1530 + 1787810_marR_upstream_-200_0_ecoli_D_1617001_1617201 R -140 -127 gaatGAATTGACCGATGCcacg 0.30 MarR
Cell processes-Protection responses gaan{8}tgc|gcan{8}ttc CRP b1874 - 1788182_cutC_upstream_-200_0_ecoli_R_1956984_1957184 R -145 -132 gggcGAATTATCGGATGCacag 0.30 .
Macromolecule metabolism-Macromolecule synthesis, modification acgn{12}act|agtn{12}cgt ArcA b1274 + 1787529_topA_upstream_-200_0_ecoli_D_1328872_1329072 R -142 -125 gttcACGAAAATTCAGGTGACTgagt 0.00 .
Macromolecule metabolism-Macromolecule synthesis, modification acgn{12}act|agtn{12}cgt ArcA b3635 - 1790066_mutM_upstream_-200_0_ecoli_R_3808779_3808979 D -196 -179 cactACGAAGAACAAACGTACTaagc 0.00 .
Macromolecule metabolism-Macromolecule synthesis, modification acgn{12}act|agtn{12}cgt ArcA b3635 - 1790066_mutM_upstream_-200_0_ecoli_R_3808779_3808979 R -143 -126 gatcACGTGCTGGCGAACAACTggat 0.00 .
Macromolecule metabolism-Macromolecule synthesis, modification acgn{12}act|agtn{12}cgt ArcA b4171 + 1790613_miaA_upstream_-200_0_ecoli_D_4396630_4396830 D -86 -69 tggaACGGTTATGTCCGCAACTtgtg 0.00 .
Global functions-Global regulatory functions gggn{5}tta|taan{5}ccc CytR b0399 + 1786599_phoB_upstream_-200_0_ecoli_D_416166_416366 D -165 -155 gcatGGGCGCGATTAtacc 0.20 PhoB
Global functions-Global regulatory functions gggn{5}tta|taan{5}ccc CytR b0399 + 1786599_phoB_upstream_-200_0_ecoli_D_416166_416366 R -190 -180 gccaGGGAACCGTTAtgcg 0.20 PhoB
Global functions-Global regulatory functions gggn{5}tta|taan{5}ccc CytR b0439 + 1786643_lon_upstream_-200_0_ecoli_D_457912_458112 D -153 -143 aaagGGGGGATTTTAtctc 0.20 .
Global functions-Global regulatory functions gggn{5}tta|taan{5}ccc CytR b0439 + 1786643_lon_upstream_-200_0_ecoli_D_457912_458112 R -186 -176 gtatGGGAATGGTTAatta 0.20 .
Global functions-Global regulatory functions gggn{5}tta|taan{5}ccc CytR b2573 - 1788926_rpoE_upstream_-200_0_ecoli_R_2708032_2708232 D -17 -7 tttgGGGAGACTTTAcctc 0.20 .
Global functions-Global regulatory functions gggn{5}tta|taan{5}ccc CytR b3067 + 1789448_rpoD_upstream_-200_0_ecoli_D_3210488_3210688 R -122 -112 acgaGGGCGTACTTAtata 0.20 .
Global functions gggn{5}tta|taan{5}ccc CytR b0399 + 1786599_phoB_upstream_-200_0_ecoli_D_416166_416366 D -165 -155 gcatGGGCGCGATTAtacc 0.20 PhoB
Global functions gggn{5}tta|taan{5}ccc CytR b0399 + 1786599_phoB_upstream_-200_0_ecoli_D_416166_416366 R -190 -180 gccaGGGAACCGTTAtgcg 0.20 PhoB
Global functions gggn{5}tta|taan{5}ccc CytR b0439 + 1786643_lon_upstream_-200_0_ecoli_D_457912_458112 D -153 -143 aaagGGGGGATTTTAtctc 0.20 .
Global functions gggn{5}tta|taan{5}ccc CytR b0439 + 1786643_lon_upstream_-200_0_ecoli_D_457912_458112 R -186 -176 gtatGGGAATGGTTAatta 0.20 .
Global functions gggn{5}tta|taan{5}ccc CytR b2573 - 1788926_rpoE_upstream_-200_0_ecoli_R_2708032_2708232 D -17 -7 tttgGGGAGACTTTAcctc 0.20 .
Global functions gggn{5}tta|taan{5}ccc CytR b3067 + 1789448_rpoD_upstream_-200_0_ecoli_D_3210488_3210688 R -122 -112 acgaGGGCGTACTTAtata 0.20 .