Gene Expression Analysis Tools



Credits.
Except for the parts described hereafter, the GETools have been entirely written by Araceli Huerta-Moreno (amhuerta@ccg.unam.mx). The programs included in this package can be used trough a License Agreement for academic or non commercial use.

feature-map and dyad-detector have been written by Jacques van Helden (http://www.ucmb.ulb.ac.be/~jvanheld/   jvanheld@ucmb.ulb.ac.be). The web interface for those two programs is by Jacques van Helden, too.

genomic-map has been written by Daniel P. Zimmer (http://coli.berkeley.edu/cgi-bin/ecoli/coli_entry.pl  zimmer@nature.berkeley.edu)

The genomic sequence and all transcriptional regulatory data, unknown and predicted information, are imported from RegulonDB of CCG-UNAM (http://regulondb.ccg.unam.mx/).

The functional gene classification data is imported from Genprotec (http://genprotec.mbl.edu/).

The E.coli Paralogous data are kindly provided by Gabriel Moreno-Hagelsieb and consisted of BLASTP reciprocal best hits (http://microbiome.wordpress.com/research/orthologs/).

Predicted Operon data are kindly provided by Gabriel Moreno-Hagelsieb and the data can be found in RegulonDB, or http://microbiome.wordpress.com/research/predicting-transcription-units/.

The microarray data used in all demo page are imported from E.coli Genome Project of University of Wisconsin-Madison (http://www.genome.wisc.edu/)